I have yet to read back through this entire thread, as my refluxing little man has just recently had a flare up, horrible rash ect. and it's been terrible to deal with - which is why we're almost certain it has to be a Sal's intolerence. He also has mucous poops (either dark orange or green) TBH, past his first week of life, I can't remember him having a "normal" poop.

At first I thought discovering the MSPI solved our problems. That was about 6 weeks ago. But about 2 weeks ago, Ds2 started to get a small bum rash, that's since intensified drastically, and the past week his reflux symptoms are worse then ever!

We don't medicate his reflux. I feel like medicating it would be just masking the symptom and not treating the cause, esp. if it's intolerence issues. I do give him Colic Calm when he's really bad (a homeopathic gripe water)
I'm completely overwhelmed ATM. DH read over the symptoms of Sal intolerence and it seems to be exactly issues faced within our family. Hypothyroidism (MIL, my mother & myself - DH has symptoms of it but is not medicated for it), IBS (my mother), endocrine system issues (MIL, DH). Even more recently I realize I've been giving Ds1 Ibuprofen since he's teething molars/k9's, and he's started to do this bizzar thing banging his head multiple times on wall ect. - That was also a symptom of Sal's!!! I couldn't believe it!
I'm sure I'm going to have LOTS of questions. I am going to be sure it's not gluten or eggs - so I will go completely off of those first. But in the meantime I think we're going to figure out our plan of attack on Sal's., b/c I think we'll have to start that sooner rather than later.
Quick ? - I know for sure Ds2 is MSPI, so on the Sal's diet I will have to be sure to avoid all dairy as well, right? It will still work if I stay away from dairy I'm assuming.
Also, my thyroid medication is essential ATM (although I've been trying to get off of it..) but I know it's got colourant in it. What does one do in that situation.
We eat an all natural/organic diet as it is. I'm assuming we can continue that while doing the RPAH diet... although I'm afraid this will get expensive

Since discovering Ds2's MSPI I've only been eating: water, most fruits/veg, quinoa, brown rice, Oatmeal, eggs, organic meats, olive oil. I take a calcium supplement, fish oil & PNV. That's it. So once I rule out eggs/gluten we'll most likely start the RPAH diet within the next few weeks.
Last question - I did start Ds2 on probiotics (by Klaire labs, dairy, soy, egg, gluent ect free) they are binded with chicory root - is that ok to still give him. I know his intestines are in complete distress and I'm trying to balance it out.
I feel somewhat defeated. DH & I strive to live a healthy organic lifestyle, yet we're still faced with this?! Unbelievable - even "healthy" natural foods are causing issues. We've mostly managed our lifestyle ourselves, but will most likely start seeing a naturopath now. It's difficult, b/c in Canada w/ DH's benefits, our healthcare/prescription meds are covered. Naturopathic medicine for the most part is not.

Anyways, thanks again for the support, my mind is just spining!